UPSC MainsAGRICULTURE-PAPER-I201612 Marks
Q6.

Define 'general combining ability'. Explain the genetic basis and methods for estimating SCA in diallel mating system.

How to Approach

This question requires a clear understanding of plant breeding principles, particularly focusing on the concept of general combining ability (GCA). The approach should be to first define GCA, then delve into its genetic basis and how it's estimated using diallel crosses. A structured response with clear headings, explanations of the underlying genetics, and a step-by-step explanation of the estimation method is essential. Diagrams or tables can be used to enhance clarity. Finally, briefly discussing limitations would add depth.

Model Answer

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Introduction

The relentless quest for improved crop varieties necessitates a deep understanding of genetic principles. Plant breeding, the science of crop improvement, relies heavily on these principles to develop high-yielding, disease-resistant, and climate-resilient varieties. A cornerstone of hybrid development is the concept of combining ability, which predicts the performance of hybrids based on the genetic makeup of their parents. This answer will focus on 'general combining ability' (GCA), elucidating its genetic basis and methods employed for its estimation within a diallel mating system, a crucial technique in modern plant breeding.

Defining General Combining Ability (GCA)

General Combining Ability (GCA) refers to the average effect of an inbred line (parent) on the performance of its hybrids when crossed with a diverse population of testers. Essentially, it represents the inherent genetic contribution of a parent towards desirable traits in its progeny. A parent with high GCA for a specific trait consistently produces superior hybrids regardless of the tester used. It's a measure of the additive genetic effects of a line.

Genetic Basis of General Combining Ability

The genetic basis of GCA lies primarily in the additive gene effects. Additive gene effects mean that the alleles present in a parent contribute directly to the trait expression in the hybrid, without significant interaction with other genes. While dominance effects can also contribute, GCA is largely influenced by the frequency of favorable additive alleles. Epistatic interactions (interactions between genes) are *not* directly reflected in GCA, but rather in specific combining ability (SCA).

Diallel Mating System and Estimation of SCA

A diallel mating system is a crucial tool for estimating GCA and specific combining ability (SCA). A diallel cross involves crossing every possible pair of parents within a population. For example, if we have four parents (P1, P2, P3, P4), the diallel would involve crosses like P1xP2, P1xP3, P1xP4, P2xP3, P2xP4, and P3xP4, and so on. The resulting hybrids are then evaluated for the trait of interest.

Methods for Estimating GCA

The estimation of GCA involves a series of statistical calculations. Here's a breakdown:

  1. Hybrid Evaluation: The F1 hybrids produced from the diallel cross are grown in a randomized block design (RBD) or similar experimental design. Phenotypic data for the trait of interest is recorded.
  2. Calculating Hybrid Performance: The average performance of each hybrid is calculated.
  3. Estimating GCA Effects: The GCA effects of each parent are estimated using a statistical model. This model typically uses the hybrid performance data and incorporates a 'fixable' component for GCA effects. The formula simplifies to:
    GCAi = Σ (Hybrid Performanceij) / ni - Overall Mean
    Where: GCAi is the GCA effect of parent 'i', Hybrid Performanceij is the performance of hybrid resulting from the cross of parent 'i' and parent 'j', and ni is the number of crosses involving parent 'i'.
  4. Statistical Significance: Statistical tests (e.g., t-tests, F-tests) are performed to determine the significance of the GCA effects. Significant GCA effects indicate that the parent contributes significantly to the hybrid’s performance.

Example: Consider four parents: A, B, C, and D. After evaluating the F1 hybrids (A x B, A x C, A x D, B x C, B x D, C x D), the average performance of these hybrids is recorded. The GCA effect of parent A is then calculated by summing the performance of all hybrids involving A (A x B, A x C, A x D) and dividing by 3 (the number of crosses involving A), and then subtracting the overall mean hybrid performance.

Limitations of GCA Estimation

While GCA provides valuable information, it’s crucial to acknowledge its limitations:

  • Assumes Additivity: GCA estimation relies on the assumption that the genetic effects are primarily additive. Significant dominance or epistasis can distort the GCA estimates.
  • Tester Dependency: The GCA estimate is influenced by the testers used. Different testers may reveal different GCA effects.
  • Computational Intensity: Diallel crosses involving a large number of parents can be computationally intensive and require significant resources.
Parameter Description
GCA Average effect of a parent on hybrid performance across diverse testers.
SCA Effect of a parent arising from interaction with another parent.
Diallel Cross Crossing all possible pairs of parents within a population.

Conclusion

In conclusion, general combining ability is a critical concept in plant breeding, reflecting the inherent genetic contribution of a parent towards desirable traits in its hybrids. Its estimation through diallel mating systems, while statistically intensive, provides valuable insights for selecting superior parents for hybrid development. Understanding the genetic basis, primarily additive gene effects, and acknowledging the limitations of GCA estimation are vital for effective crop improvement programs. Future advancements in genomic selection may further refine our ability to predict combining ability and accelerate the breeding process.

Answer Length

This is a comprehensive model answer for learning purposes and may exceed the word limit. In the exam, always adhere to the prescribed word count.

Additional Resources

Key Definitions

Specific Combining Ability (SCA)
Specific Combining Ability (SCA) represents the interaction effect between two parents in producing a hybrid with superior performance. It's often attributed to dominance and epistasis.
Epistasis
Epistasis is a genetic phenomenon where the effect of one gene is masked or modified by the effect of another gene.

Key Statistics

In maize breeding programs, diallel crosses often involve 6-8 parents to maximize the information gained for GCA and SCA estimates.

Source: Knowledge cutoff

Approximately 60-80% of the genetic variation for yield in many crops can be attributed to additive gene effects, which are primarily reflected in GCA.

Source: Knowledge cutoff

Examples

Dwarfing Rice Varieties

The development of semi-dwarf rice varieties (like IR8) in the 1960s, crucial for the Green Revolution, heavily relied on combining ability analysis to identify parents with favorable GCA for traits like yield and lodging resistance.

Frequently Asked Questions

What is the difference between GCA and SCA?

GCA reflects the inherent genetic contribution of a parent, while SCA represents the interaction effect between two parents. GCA is largely additive, while SCA involves dominance and epistasis.

Topics Covered

AgricultureGeneticsPlant BreedingHybrid breeding, genetic analysis, breeding design, statistical genetics